Language: Turkish
Organisers: TÜBİTAK ULAKBİM and ITU-UHeM
Format: Online
Skill Level: Intermediate & Advanced
Prerequisite(s): Basic knowledge in protein structure and function, familiarity with HPC and linux systems, prior experience with protein visualization tools such as Pymol, VMD, Chimera etc.
Topic: De novo peptide design with RFdiffusion a generative model
Overview: This course aims to demonstrate how RFdiffusion can be used to generate peptides binding to target proteins.
Agenda:
- Introduction on RFdiffusion method
- How to install RFdiffusion on UHEM
- Running RFdiffusion on sample proteins
- Interpretation of the results
Target Audience: Industry and Academia
Tools, libraries, frameworks used: RFdiffusion library
Learning Objectives:
- Understanding how RFdiffusion works
- Being able to generate peptides on a target protein
- Learning capabilities and limitations of RFdiffusion method
Instructor: Doç. Dr. Sefer BADAY – ITU
Contact: ncc@ulakbim.gov.tr