Gromacs and Molecular Dynamics Simulations of Biomembranes

Course/Event Essentials

Event/Course Start
Event/Course End
Event/Course Format
Online
Live (synchronous)
Primary Event/Course URL
https://indico.hpc.uevora.pt/event/98/

Venue Information

Country: Portugal
Venue Details: Click here

Training Content and Scope

Scientific Domain
Biochemistry, bioinformatics and life sciences
Technical Domain
Not technical domain specific
Level of Instruction
Beginner
Intermediate
Sector of the Target Audience
Research and Academia
Industry
HPC Profile of Target Audience
Application Users
Application Developers
Language of Instruction
English

Other Information

Organiser
High Performance Computing Chair - University of Évora
High Performance Computing Center - University of Évora (HPCUE)
Event/Course Description

Rationale

This workshop is designed to provide participants with a comprehensive understanding of molecular dynamics simulations, the use of the Gromacs software, and its application in simulating biomembranes. Participants will gain know-how in setting up and running simulations, analyzing results, and interpreting biomembrane dynamics.

Syllabus

  • GROMACS Overview
  • Introduction to molecular dynamics (MD)
  • Force fields in MD
  • MD Simulations with Gromacs
  • MD Trajectories
  • Advanced Topics in MD Simulations
  • Biomembrane structure and composition
  • Case studies and research Applications